archetype (adl_version=1.4; uid=1.2.36.1.2001.1001.100.106.1.0) openEHR-EHR-CLUSTER.specimen_preparation.v1 concept [at0000] -- Specimen Preparation language original_language = <[ISO_639-1::en]> description original_author = < ["name"] = <""> ["organisation"] = <"NEHTA"> ["email"] = <"clinicalinfo@nehta.gov.au"> ["date"] = <"13-Aug-2010"> > details = < ["en"] = < language = <[ISO_639-1::en]> purpose = <"To record details of laboratory specimen processing"> use = <"Generally used within a CLUSTER.specimen archetype."> keywords = <"specimen", "laboratory", "sample", "histopathology", "histology", "pathology"> misuse = <""> copyright = <"© openEHR Foundation"> > > lifecycle_state = <"ApprovedCandidate"> other_contributors = <"Dr Ian McNicoll", "Sam Heard Ocean Informatics", "Heather Leslie Ocean Informatics", "Koray Atalag University of Auckland", "Eric Browne", "Stephen Chu", "Eleanor Royle", "Ning Pan", "Robert L'egan", "Don Stewart", "Stephen Royce"> other_details = < ["references"] = <"Digital Imaging and Communications in Medicine (DICOM) Supplement 122: Specimen Module and Revised Pathology SOP Classes DICOM Standards Committee, Working Groups 26, Pathology IHE Anatomic Pathology Technical Framework Volume 1 (PAT TF-1) Revision 1.2 – Trial Implementation November 24, 2008"> ["MD5-CAM-1.0.1"] = <"469EFAB49F635E54119CD7B4D140D064"> > definition CLUSTER[at0000] matches { -- Specimen Preparation items cardinality matches {1..*; unordered} matches { CLUSTER[at0077] occurrences matches {0..1} matches { -- Processing Step items cardinality matches {1..*; unordered} matches { ELEMENT[at0072] occurrences matches {0..1} matches { -- DateTime of Processing Step value matches { DV_DATE_TIME matches {*} } } ELEMENT[at0085] occurrences matches {0..1} matches { -- Parent Specimen Identifier value matches { DV_TEXT matches {*} } } ELEMENT[at0071] occurrences matches {0..1} matches { -- Processing Step Type value matches { DV_CODED_TEXT matches { defining_code matches { [local:: at0078, -- Specimen collection at0079, -- Specimen receiving at0080, -- Sampling of tussue specimen at0081, -- Staining at0082, -- Specimen processing at0083] -- Specimen storage } } } } ELEMENT[at0074] occurrences matches {0..1} matches { -- Specimen Processing Type value matches { DV_TEXT matches {*} } } } } ELEMENT[at0087] occurrences matches {0..1} matches { -- Description value matches { DV_TEXT matches {*} } } CLUSTER[at0086] occurrences matches {0..1} matches { -- Specific Preparation items cardinality matches {1..*; unordered} matches { ELEMENT[at0073] occurrences matches {0..1} matches { -- Sampling Method value matches { DV_TEXT matches {*} } } ELEMENT[at0084] occurrences matches {0..1} matches { -- Staining Method value matches { DV_TEXT matches {*} } } ELEMENT[at0075] occurrences matches {0..1} matches { -- Embedding Medium value matches { DV_TEXT matches {*} } } ELEMENT[at0076] occurrences matches {0..1} matches { -- Fixative value matches { DV_TEXT matches {*} } } } } } } ontology term_definitions = < ["en"] = < items = < ["at0000"] = < text = <"Specimen Preparation"> description = <"To record details of laboratory specimen processing"> dc_id = <"16174"> detail_docref = <"data_groups/NEHTA-16174-Specimen_Preparation-Data_Group.xml"> spec_id = <"106"> status = <"Draft"> version = <"1.0"> > ["at0071"] = < text = <"Processing Step Type"> description = <"A DICOM compatible code describing a single processing step."> dc_id = <"16317"> status = <"Draft"> detail_docref = <"data_elements/NEHTA-16317-Processing_Step_Type-Data_Element.xml"> version = <"1.0"> > ["at0072"] = < text = <"DateTime of Processing Step"> description = <"The data and time that the processing step occured."> dc_id = <"16315"> status = <"Draft"> detail_docref = <"data_elements/NEHTA-16315-DateTime_of_Processing_Step-Data_Element.xml"> version = <"1.0"> > ["at0073"] = < text = <"Sampling Method"> description = <"The sampling method used. e.g dissection, block sampling"> dc_id = <"16321"> status = <"Draft"> detail_docref = <"data_elements/NEHTA-16321-Sampling_Method-Data_Element.xml"> version = <"1.0"> > ["at0074"] = < text = <"Specimen Processing Type"> description = <"A physical process applied to the specimen e.g. block embedding"> dc_id = <"16318"> status = <"Draft"> detail_docref = <"data_elements/NEHTA-16318-Specimen_Processing_Type-Data_Element.xml"> version = <"1.0"> > ["at0075"] = < text = <"Embedding Medium"> description = <"The medium within which the specimen is embedded e.g paraffin"> dc_id = <"16323"> status = <"Draft"> detail_docref = <"data_elements/NEHTA-16323-Embedding_Medium-Data_Element.xml"> version = <"1.0"> > ["at0076"] = < text = <"Fixative"> description = <"The fixative used"> dc_id = <"16324"> status = <"Draft"> detail_docref = <"data_elements/NEHTA-16324-Fixative-Data_Element.xml"> version = <"1.0"> > ["at0077"] = < text = <"Processing Step"> description = <"Used to support DICOM Supp 122 compatible specimen processing steps. Describes the single immediate processing step to go from parent to current specimen"> dc_id = <"16314"> status = <"Draft"> detail_docref = <"data_groups/NEHTA-16314-Processing_Step-Data_Group.xml"> version = <"1.0"> > ["at0078"] = < text = <"Specimen collection"> description = <"*"> > ["at0079"] = < text = <"Specimen receiving"> description = <"*"> > ["at0080"] = < text = <"Sampling of tussue specimen"> description = <"*"> > ["at0081"] = < text = <"Staining"> description = <"*"> > ["at0082"] = < text = <"Specimen processing"> description = <"*"> > ["at0083"] = < text = <"Specimen storage"> description = <"*"> > ["at0084"] = < text = <"Staining Method"> description = <"Stain used for a microscopy slide."> dc_id = <"16322"> status = <"Draft"> detail_docref = <"data_elements/NEHTA-16322-Staining_Method-Data_Element.xml"> version = <"1.0"> > ["at0085"] = < text = <"Parent Specimen Identifier"> description = <"Unique identifier of the parent specimen, where the specimen is split into sub-samples."> dc_id = <"16187"> status = <"Draft"> detail_docref = <"data_elements/NEHTA-16187-Parent_Specimen_Identifier-Data_Element.xml"> version = <"1.0"> > ["at0086"] = < text = <"Specific Preparation"> description = <"Details of the specific preparation carried out during a single processing step."> dc_id = <"16320"> status = <"Draft"> detail_docref = <"data_groups/NEHTA-16320-Specific_Preparation-Data_Group.xml"> version = <"1.0"> > ["at0087"] = < text = <"Description"> description = <"A general description of the specimen prepartion."> dc_id = <"16319"> status = <"Draft"> detail_docref = <"data_elements/NEHTA-16319-Description-Data_Element.xml"> version = <"1.0"> > > > >